“Apart from science, I like reading, stargazing and swimming.”

jiahuili[at]zju.edu.cn

Research Assistant

My interests cover bacterial secretion mechanism, bacterial antimicrobial resistance, bacteria-phage interaction and bioinformatics. Now my project is associated with the isolation of Klebsiella phages and Acinetobacter phages in China. I hope to evaluate protein structures predicted from phage genomes, especially proteins in the tails of phages.

Education

2016 – 2019

Wenzhou Medical University, China
Masters in Medicine
Prof. Zhou Tieli

2017 – 2019

Monash University, Australia
Visiting student
Prof. Trevor Lithgow & Dr. Wang Jiawei

2012 – 2016

Clinical College of Hebei Medical University, China
Bachelor of Science

Work Experience

2021 – present

Zhejiang University, China
Research Assistant
Associate Prof. Sebastian Leptihn

2019 – 2020

Guilin University of Electronic Technology, China
Research Assistant
Prof. Zhang Yanju & Dr. Wang Jiawei

Publications

Dai, W.+, Li, J.+, Li, Q., Cai, J., Su, J., Stubenrauch, C. & Wang, J. (2021). PncsHub: a platform for annotating and analyzing non-classically secreted proteins in Gram-positive bacteria. Nucleic Acids Research. gkab814.

Wang, J., Li, J., Xie, R., Hou, Y., Dai, W., Marquez-Lago, T., Leier, A., Zhou, T., Torres, V., Hay, I., Stubenrauch, C., Zhang, Y., Song, J. & Lithgow, T. (2021). BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria. Nucleic Acids Research, 49(D1), D651-D659.

Wang, J., Dai, W., Li, J., Li, Q., Xie, R., Zhang, Y., Stubenrauch C. & Lithgow, T. (2021). AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins. Nucleic Acids Research, 49(D1), D630-D638.

Wang, J., Dai, W., Li, J., Xie, R., Dunstan R. A., Stubenrauch C., Zhang, Y. & Lithgow, T. (2020). PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins. Nucleic acids research, 48(W1), W348-W357.

Perlaza-Jiménez, L., Wu, Q., Von Vergel, L. T., Zhang, X., Li, J., Rocker, A., Lithgow, T., Zhou, T. & Vijaykrishna, D. (2020). Forensic genomics of a novel Klebsiella quasipneumoniae type from a neonatal intensive care unit in China reveals patterns of colonization, evolution and epidemiology. Microbial genomics, 6(10), mgen000433.

Xie, R.+, Li, J.+, Wang, J.+, Dai, W., Leier, A., Marquez-Lago, T. T., Akutsu, T., Lithgow, T., Song, J. & Zhang, Y. (2020). DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy. Briefings in Bioinformatics, 22(3), bbaa125.

Li, J., Bi, W., Dong, G., Zhang, Y., Wu, Q., Dong, T., Cao, J. & Zhou, T. (2020). The new perspective of old antibiotic: In vitro antibacterial activity of TMP-SMZ against Klebsiella pneumoniae. Journal of Microbiology, Immunology and Infection, 53(5), 757-765.

Zhang, Y.+, Yu, S.+, Xie, R.+, Li, J., Leier, A., Marquez-Lago T., Akutsu, T., Smith, I., Ge, Z., Wang, J., Lithgow, T. & Song, J. (2020). PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. Bioinformatics, 36(3), 704-712.

Wang, J., Li, J., Yang, B., Xie, R., Marquez-Lago, T., Leier, A., Hayashida, M., Akutsu, T., Zhang, Y., Chou, K.C., Selkrig, J., Zhou, T., Song, J. & Lithgow, T. (2019). Bastion3: a two-layer ensemble predictor of type III secreted effectors. Bioinformatics, 35(12), 2017-2028.

Li, J., Li, B., Song, J., Liu, H., Bi, W., Dong, G., & Zhou, T. (2018). Characteristic and mechanism of immobilization effect of Staphylococcus aureus on human spermatozoa. Microbial pathogenesis, 119, 28-34.