“Apart from science, I like reading, stargazing and swimming.”
Former Research Assistant in the Leptihn Lab, now a PhD student in Australia!
I am happy that I can continue my work on phages and excited about the opportunity to continue my scientific journey in the lab of Trevor Lithgow at Monash University!
My interests cover bacterial secretion mechanism, bacterial antimicrobial resistance, bacteria-phage interaction and bioinformatics. Now my project is associated with the isolation of Klebsiella phages and Acinetobacter phages in China. I hope to evaluate protein structures predicted from phage genomes, especially proteins in the tails of phages.
Education
2016 – 2019
Wenzhou Medical University, China
Masters in Medicine
Prof. Zhou Tieli
2017 – 2019
Monash University, Australia
Visiting student
Prof. Trevor Lithgow & Dr. Wang Jiawei
2012 – 2016
Clinical College of Hebei Medical University, China
Bachelor of Science
Work Experience
2021 – 2022
Zhejiang University, China
Research Assistant
Associate Prof. Sebastian Leptihn
2019 – 2020
Guilin University of Electronic Technology, China
Research Assistant
Prof. Zhang Yanju & Dr. Wang Jiawei
Publications
Dai, W.+, Li, J.+, Li, Q., Cai, J., Su, J., Stubenrauch, C. & Wang, J. (2021). PncsHub: a platform for annotating and analyzing non-classically secreted proteins in Gram-positive bacteria. Nucleic Acids Research. gkab814.
Wang, J., Li, J., Xie, R., Hou, Y., Dai, W., Marquez-Lago, T., Leier, A., Zhou, T., Torres, V., Hay, I., Stubenrauch, C., Zhang, Y., Song, J. & Lithgow, T. (2021). BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria. Nucleic Acids Research, 49(D1), D651-D659.
Wang, J., Dai, W., Li, J., Li, Q., Xie, R., Zhang, Y., Stubenrauch C. & Lithgow, T. (2021). AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins. Nucleic Acids Research, 49(D1), D630-D638.
Wang, J., Dai, W., Li, J., Xie, R., Dunstan R. A., Stubenrauch C., Zhang, Y. & Lithgow, T. (2020). PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins. Nucleic acids research, 48(W1), W348-W357.
Perlaza-Jiménez, L., Wu, Q., Von Vergel, L. T., Zhang, X., Li, J., Rocker, A., Lithgow, T., Zhou, T. & Vijaykrishna, D. (2020). Forensic genomics of a novel Klebsiella quasipneumoniae type from a neonatal intensive care unit in China reveals patterns of colonization, evolution and epidemiology. Microbial genomics, 6(10), mgen000433.
Xie, R.+, Li, J.+, Wang, J.+, Dai, W., Leier, A., Marquez-Lago, T. T., Akutsu, T., Lithgow, T., Song, J. & Zhang, Y. (2020). DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy. Briefings in Bioinformatics, 22(3), bbaa125.
Li, J., Bi, W., Dong, G., Zhang, Y., Wu, Q., Dong, T., Cao, J. & Zhou, T. (2020). The new perspective of old antibiotic: In vitro antibacterial activity of TMP-SMZ against Klebsiella pneumoniae. Journal of Microbiology, Immunology and Infection, 53(5), 757-765.
Zhang, Y.+, Yu, S.+, Xie, R.+, Li, J., Leier, A., Marquez-Lago T., Akutsu, T., Smith, I., Ge, Z., Wang, J., Lithgow, T. & Song, J. (2020). PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. Bioinformatics, 36(3), 704-712.
Wang, J., Li, J., Yang, B., Xie, R., Marquez-Lago, T., Leier, A., Hayashida, M., Akutsu, T., Zhang, Y., Chou, K.C., Selkrig, J., Zhou, T., Song, J. & Lithgow, T. (2019). Bastion3: a two-layer ensemble predictor of type III secreted effectors. Bioinformatics, 35(12), 2017-2028.
Li, J., Li, B., Song, J., Liu, H., Bi, W., Dong, G., & Zhou, T. (2018). Characteristic and mechanism of immobilization effect of Staphylococcus aureus on human spermatozoa. Microbial pathogenesis, 119, 28-34.
The Leptihn Lab 